The pdfcomment package generates *.upa and *.upb files when compiling LaTeX files. These should be ignored as well.
@@ -120,6 +120,10 @@ _minted*
*.sympy
sympy-plots-for-*.tex/
+# pdfcomment
+*.upa
+*.upb
+
#pythontex
*.pytxcode
pythontex-files-*/